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Martin Fitzpatrick's Projects

accuri2fcs icon accuri2fcs

Accuri2svg is a command line program for the conversion of Accuri .c6 flow cytometry data files to the standard .fcs format.

biocyc icon biocyc

A Python interace to the BioCyc Web API

books icon books

Source code, feedback & corrections for all of my Python programming books, including Create GUI Applications with Python & Qt

diffcast icon diffcast

Hands-free Programming Screencasts. Replay diffs between a series of files to generate faultless coding screencasts

django-flowplayer icon django-flowplayer

A drop in media player app for Django projects using the flowplayer flash player backend. Supports playlists, multiple player types and flowplayer configurations.

django-golifescience icon django-golifescience

[Archive] Previous iteration of the golifescience site based on Django. Code here for archival purposes only; have at it.

dots icon dots

A pyqt app for photo-collage using transparent pngs.

etchasnap icon etchasnap

Etch-a-Snap the Etch-a-Sketch camera, built using a Raspberry Pi Zero & Camera

gpml2svg icon gpml2svg

A command line tool and Python API for the conversion of biological pathways marked up using GPML to SVG.

graphit icon graphit

Simple scientific data graphing from the command line with matplotlib

icoshift icon icoshift

A versatile tool for the rapid alignment of 1D NMR spectra

kropbot icon kropbot

KropBot: Multiplayer remote-controlled Raspberry Pi robot

list_of_sms_gateways icon list_of_sms_gateways

This content was previously available on WikiPedia but deleted as not really encylopaedia-worthy. Since an article of mine was originally a major source for the data in the page, I took a copy for posterity. It's now here on Github, reformatted as an editable CSV file and publicly editable by all.

matlab-pubfig icon matlab-pubfig

Quickly generate publication-quality figures from MATLAB with scripted transformations.

max30100 icon max30100

A Python library for the MAX30100 HR/Oximetry sensor.

metabohunter icon metabohunter

A Python interface to the Metabohunter 1D 1H NMR metabolite identification service

metaviz icon metaviz

Metabolic pathway visualisation built on Graphviz

misa icon misa

MISA: Minimally Improved Segmental Alignment

mplstyler icon mplstyler

An API for assigning consistent marker styles to plots. Assign colours, markers, line-styles to labels and re-use on subsequent plots.

nmrbrew icon nmrbrew

Standalone 1D NMR processing application built on the Pathomx libraries

paddle icon paddle

GUI-based MaxQuant proteomics processing tool built on PaDuA and Pathomx libraries

padua icon padua

Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)

pathminer icon pathminer

A simple Python biological pathway mining algorithm based on the Biocyc database

pathomx icon pathomx

Workflow based scientific analysis built on Python

planet icon planet

Configuration for Python planets (e.g. http://planetpython.org)

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