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adept

revamping adept from scratch to make more usable in library form

adept-proxy

babelstream

STREAM, for lots of devices written in many programming models

cg-hipex

CUDA's cooperative group API has a HIP analogue for AMD GPUs. There are several functions missing in HIP's variant of cooperative groups. This repo includes analogues for those missing functions. Functions in this repo have been implemented in software without any low level tuning so the performance is not promised.

charm

The Charm++ parallel programming system. Visit https://charmplusplus.org/ for more information.

dibella.2d

Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly

gpu-arraysort

a GPU based algorithm for sorting large number of arrays, this version only sorts arrays of same size. details can be found in original publication : http://scholarworks.wmich.edu/cgi/viewcontent.cgi?article=1004&context=pcds_reports

gpu-arraysort-2.0

This version of GPU-ArraySort is capable of sorting large number of variable sized arrays, also includes some big fixes. Original publication can be found here : http://scholarworks.wmich.edu/cgi/viewcontent.cgi?article=1004&context=pcds_reports

gpu-bsw

gpu_local_ht

thread local hashtable for gpus

linking_reproducer

mass-simulator

source for the MaSS-Simulator

mhm2_staging

a capture of mhm2 gpu local assembly work for sc21 submission

miniapp_kcount

miniapp for GPU kcount portion of metahipmer pipeline

modern-cpp-programming

Modern C++ Programming Course (C++03/11/14/17/20/23/26)

ms-reduce

a data reduction algorithm for Mass Spectrometry based proteomics, details can be found in original publication at : http://bioinformatics.oxfordjournals.org/content/early/2016/01/21/bioinformatics.btw023.short

msreduce

source code for MSREDUCE

nersc_cuda_tutorial

repo for hands on exercises provided during the CUDA tutorial at NERSC's GPUs for Science event

nvbio

NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.

openacc-training-materials

Training materials provided by OpenACC.org.

poggers

A library of high performance data structures for cuda. This library is header only and can be added to a project using the C package manager.

stream

stream benchmarks from https://www.cs.virginia.edu/stream/ref.html#what

thermo-nuclear-network

timemory

Cross-language (C, C++, CUDA, and/or Python) Utility for recording timing, memory, resource usage, and hardware counters

toast3

Time Ordered Astrophysics Scalable Tools