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Research Core Unit Genomics at Hannover Medical School's Projects

alethieg icon alethieg

AlethieG - A metagenomic analysis tool - Adopted for Wochenende

filter-fastq icon filter-fastq

Filter reads from a FASTQ file using a list of identifiers.

haybaler icon haybaler

Haybaler: Collate/integrate reporting CSV or bam.txt files from the Wochenende pipeline https://github.com/MHH-RCUG/Wochenende

heatmaps icon heatmaps

Heatmap script to compare taxon abundance using output from the Wochenende pipeline

nf_reporter icon nf_reporter

Integrate metagenomic reports from our Wochenende metagenomics pipeline, raspir, growth rates and other tools using Nextflow

nf_wochenende icon nf_wochenende

A nextflow version of the Wochenende reference metagenome binning and visualization pipeline

scrnaseq icon scrnaseq

UNDER DEVELOPMENT: Workflow for single-cell RNA-seq analysis using Seurat

scrnaseq_app icon scrnaseq_app

UNDER DEVELOPMENT: Shiny app for visualisation of scRNASeq data

scrnaseq_modular_extensions icon scrnaseq_modular_extensions

UNDER DEVELOPMENT: Workflows for modular extensions of single-cell RNA-seq analysis performed with the scrnaseq script https://github.com/ktrns/scrnaseq

wochenende icon wochenende

Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3

wochenendealethieg icon wochenendealethieg

Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3

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