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Name: Research Core Unit Genomics at Hannover Medical School
Type: Organization
Location: Hannover, Germany
Name: Research Core Unit Genomics at Hannover Medical School
Type: Organization
Location: Hannover, Germany
AlethieG - A metagenomic analysis tool - Adopted for Wochenende
Filter reads from a FASTQ file using a list of identifiers.
Haybaler: Collate/integrate reporting CSV or bam.txt files from the Wochenende pipeline https://github.com/MHH-RCUG/Wochenende
Heatmap script to compare taxon abundance using output from the Wochenende pipeline
Install MooseFS file system on Ubuntu 16.04 via Ansible
Integrate metagenomic reports from our Wochenende metagenomics pipeline, raspir, growth rates and other tools using Nextflow
A nextflow version of the Wochenende reference metagenome binning and visualization pipeline
UNDER DEVELOPMENT: Workflow for single-cell RNA-seq analysis using Seurat
UNDER DEVELOPMENT: Shiny app for visualisation of scRNASeq data
UNDER DEVELOPMENT: Workflows for modular extensions of single-cell RNA-seq analysis performed with the scrnaseq script https://github.com/ktrns/scrnaseq
Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
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