Deadlock in multiproccessing about mamnet

[micahvista]

Dear leonard-creator:
Can you send me a copy of the bam file, my email is [email protected]. So, I can run some tests and try to locate the errors.
Thanks
Hongyu Ding

[micahvista]

Dear leonard-creator:
I just updated the code; can you try the latest version and give me feedback?
Thanks
Hongyu Ding

[leonard-creator]

Hi Hongyu Ding,

I tryed again unfortunately still the same problem. Nothing happens after: 'Stop signal sended to callsv. Also, it doesn't matter what number of threads I enter as parameters, the actual threads are always much more. And the problem of the program not terminating fully is also still there.

python MAMnet.py -bamfilepath md_bam/HG00733.svision.demo.md.bam -workdir workdir/ -outputpath results/variants.vcf -step 50 -threads 2

python MAMnet.py -bamfilepath md_bam/HG00733.svision.demo.md.bam -workdir workdir/ -outputpath results/variants.vcf -step 50 -threads 12

[micahvista]

Dear leonard-creator:
I am still trying to reproduce the error, once I fixed I will let you know.
Thanks.
Hongyu Ding

[leonard-creator]

Hi Hongyu Ding,
I debugged myself and could identify the error in the call_sv function, which seems to have problems loading the model. I fear, something with my GPU-tensorflow combined settings is not right. I will investigate more and let you know as well.