microbiaki Goto Github PK

02-r-genomicviz

2020-06-22-whoi-r

Course materials for JP/SSF summer R course at WHOI

2020-11-09-whoi-r

Fall R data science course for WHOI staff

2021-06-15-whoi-r

Course material for JP/SSF summer course at WHOI

2021-10-27-workshop-datareuse

Landing page for workshop on data reuse. The template of this repository is from the Carpentries (https://github.com/carpentries/workshop-template)

2021-12-01-whoi-plotting

Plotting workshop in R

biopieces

Biopieces is a bioinformatic framework of tools easily used and easily created.

charlie

Bigelow HPCC

day3am_read_recruitment

envbio2021-unix

enveomics

Scripts and reference libraries at Kostas lab.

github-pages-with-jekyll

github-slideshow

A robot powered training repository :robot:

gtotree

A user-friendly workflow for phylogenomics

hw_assigment_0a

lesson1_unix

magpy

Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)

metapathways

A modular pipeline for constructing Pathway/Genome Databases from environmental sequence information

metawrap

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

microbiaki.github.io

microbialgardens

ohw20-tutorials

Ocean Hack Week 2020 - Tutorials

python

Repository for BVCN Python tutorials

r-ventures

r3-exercises

r3-train

Reproducible Reporting with R (R3) training materials for marine ecosystem indicators

sag-mg-recruit

Read recruitment pipeline 2.0 for comparison of sag abundance across metagenomes

scripts

General scripts used in the lab. Almost all of them are in core perl, i.e require no modules that don't already come with a perl installation. These script are currently in use by the Lab, so expect full support. This material is based upon work supported by the National Science Foundation under Grant Number EAR-1035955. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.

starter-academic

tara-euk-metag