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Microbial Pangenomes Lab's Projects

bacgwasim icon bacgwasim

A Simulator for Bacterial Machine learning and Genome-Wide Association Studies

chibio icon chibio

ChiBio primary operating system.

panaroo icon panaroo

An updated pipeline for pangenome investigation

panfeed icon panfeed

A k-mer counter that streams gene-cluster specific k-mers, while keeping k-mer positional information. Useful for microbial GWAS analyses with higher interpretability.

panfeed_benchmark_scripts icon panfeed_benchmark_scripts

This repository contains the scripts that were used to test panfeed and visualize results of other programs.

salislabcode icon salislabcode

Models, design algorithms, and other software related to Salis lab publications

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