Related Issues (20)
- `Study.slot_usage.protocol_link` should not assert `multivalued: true` HOT 2
- `linkml-sqldb dump` crashes in `berkeley-schema-fy24` because of multiple possible `Study.part_of` paths
- Resolve omics_processing has_output data_object referential integrity exceptions in study nmdc:sty-11-dcqce727 HOT 3
- update code to delete unconnected workflow activity and data objects to same logging format as Michael's deletion function HOT 1
- Resolve referential integrity exceptions for `nmdc:sty-11-547rwq94` Metagenome Omics Processing records HOT 2
- `slot_usage` parent issue HOT 2
- remove redundant `slot_usage`s HOT 1
- fix inconsistent `slot_usages` HOT 1
- Biosample.slot_usage.gold_biosample_identifiers.range: external_identifier -> uriorcurie
- QuantityValue.slot_usage.has_numeric_value.range: Float -> Double HOT 2
- Metabolomics Schema Updates Meta Issue HOT 6
- Flush out `SubstanceRoleEnum` HOT 1
- Add `sample_portion` to `SubsamplingProcess`
- Add `StorageProcess` class (a subclass of `MaterialProcessing` with slots like `substances_used` (already exists) and `contained_in` slot (already exists), `duration` (already exists), and `temperature` (already exists). With `input` and 'output` HOT 3
- Expand `StationaryPhaseEnum` to include values needed for GC-MS and LC-MS metab data HOT 1
- Accommodate multiple detection configurations for single `MassSpectrometry` instance HOT 1
- Add `workflow_version` slot to `WorkflowExecution` classes HOT 1
- Add slot `workflow_configuration_object` should be multivalued with a range of `DataObject` with the config files captured as `DataObject`s HOT 3
- Create `MassSpectrometryConfiguration` class and modify existing `MassSpectrometry` class to accommodate
- Rename `has_metabolite_quantification` and associated class to `has_metabolite_identification` HOT 5
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