Related Issues (20)
- remove `ecosystem_diagram.md` from berkeley-schema-fy24 HOT 3
- Automate MongoDB Referential Integrity Queries
- DataPortal can be searched for `Pathway`s and `OntologyGroup`s... does that justify leaving them in nmdc-schema?
- simplify usage of Solution by DissolvingProcess in berkeley-schema-fy24
- MobilePhaseComponents instead of Solutions
- determine schema imports graph HOT 1
- ensure that each src/schema YAML file can be re-generated in isoloation HOT 1
- Referential Integrity errors in 2 imported JGI studies
- ensure that the origin of all `assets/` files can be determined by Makefile or Python code in the repo or high-quality comments
- Automate `data_qc` scripts
- `Study.slot_usage.protocol_link` should not assert `multivalued: true` HOT 2
- `linkml-sqldb dump` crashes in `berkeley-schema-fy24` because of multiple possible `Study.part_of` paths
- Resolve omics_processing has_output data_object referential integrity exceptions in study nmdc:sty-11-dcqce727 HOT 3
- update code to delete unconnected workflow activity and data objects to same logging format as Michael's deletion function HOT 1
- Resolve referential integrity exceptions for `nmdc:sty-11-547rwq94` Metagenome Omics Processing records HOT 2
- `slot_usage` parent issue HOT 2
- remove redundant `slot_usage`s HOT 1
- fix inconsistent `slot_usages` HOT 1
- Biosample.slot_usage.gold_biosample_identifiers.range: external_identifier -> uriorcurie
- QuantityValue.slot_usage.has_numeric_value.range: Float -> Double HOT 2
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from nmdc-schema.