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check if classes associated with `alternative_identifiers` can use ANY `alternative_identifiers` about nmdc-schema HOT 5 OPEN

turbomam commented on July 25, 2024

check if classes associated with `alternative_identifiers` can use ANY `alternative_identifiers`

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Comments (5)

turbomam commented on July 25, 2024

id: nmdc:bsm-99-dtTMNb
part_of:
  - nmdc:sty-00-abc123
env_broad_scale:
  has_raw_value: ENVO:00002030
  term:
    id: ENVO:00002030
env_local_scale:
  has_raw_value: ENVO:00002169
  term:
    id: ENVO:00002169
env_medium:
  has_raw_value: ENVO:00005792
  term:
    id: ENVO:00005792
alternative_identifiers:
  - generic:123

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turbomam commented on July 25, 2024

linkml-validate \
    --schema  nmdc_schema/nmdc_materialized_patterns.yaml  \
    --target-class  Biosample src/data/valid/Biosample-minimal-with-alternative-identifiers.yaml

No issues found

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turbomam commented on July 25, 2024

id: nmdc:bsm-99-dtTMNb
part_of:
  - nmdc:sty-00-abc123
env_broad_scale:
  has_raw_value: ENVO:00002030
  term:
    id: ENVO:00002030
env_local_scale:
  has_raw_value: ENVO:00002169
  term:
    id: ENVO:00002169
env_medium:
  has_raw_value: ENVO:00005792
  term:
    id: ENVO:00005792
gold_study_identifiers:
  - gold:Gs123

linkml-validate \
    --schema  nmdc_schema/nmdc_materialized_patterns.yaml  \
    --target-class  Biosample src/data/valid/Biosample-minimal-with-study-id.yaml

No issues found

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turbomam commented on July 25, 2024

@aclum @cmungall ^

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aclum commented on July 25, 2024

Is this a linkml bug? If it is allowed why doesn't it show up in the documentation as an inherited slot?

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