Comments (3)
related to issue microbiomedata/nmdc-runtime#5
from nmdc-schema.
it's inherited from activity
from nmdc-schema.
@cmungall Yes. You are right :)
However, the started at time
and ended at time
slots are not required. If I remove the started at time
and ended at time
properties, it validates against the jsonschema. E.g., this is valid:
{"activity_set":
[
{
"id": "nmdc:647b163bdcb9528b8dcc8ab9b506c957",
"name": "MetagenomeAnnotation activity for gold:Gp0324040",
"was_informed_by": "gold:Gp0324040",
"type": "nmdc:MetagenomeAnnotation",
"execution_resource": "NERSC - Cori",
"git_url": "https://github.com/microbiomedata/mg_annotation/releases/tag/0.1",
"has_input": [
"nmdc:7e0bb15dc62ea4a5ae94f51af347129f"
],
"has_output": [
"nmdc:dca7ca0cc779868ceac63aa3af6a3070",
"nmdc:c177fd732e25dda4d2afa10159e8d0b4",
"nmdc:b09c3cd4ad025e106e51f3234bf3850f",
"nmdc:1fd680ec996ea2043fd34468e5c3464a",
"nmdc:7796820582563a8b3867de9554b1a8ac"
]
},
{
"id": "nmdc:0e9fb1e720caf88f61ab8bc4d866af7e",
"name": "MetagenomeAnnotation activity for gold:Gp0324044",
"was_informed_by": "gold:Gp0324044",
"type": "nmdc:MetagenomeAnnotation",
"execution_resource": "NERSC - Cori",
"git_url": "https://github.com/microbiomedata/mg_annotation/releases/tag/0.1",
"has_input": [
"nmdc:6a455b07be6e9c6b3f0631858a8ade17"
],
"has_output": [
"nmdc:6d6bc7279ced7706d60024621e3bd32f",
"nmdc:50f2fe8d10b7f498c092ad58d84566e9",
"nmdc:1aa4f17a80bf5f1783b044261bd0122e",
"nmdc:a17065ca9209cb2774e2364c6d4a4e09",
"nmdc:2ac6dc3b3e885520db0e4604c641cde3"
]
}
]
}
from nmdc-schema.
Related Issues (20)
- model library preparation HOT 6
- add gen-pop-linkml2sheets import and project.Makefile target
- Biosamples metadata requirements derived from a pooling process HOT 3
- poetry update currently leads to the inability to validate uriorcurie values HOT 12
- In what ways does the casing of GOLD vs gold matter? HOT 2
- how to tell a slot to behave like a primary identifier
- how to tell a slot to behave like an external identifier
- NEON soil metagenome story HOT 5
- Tube/plate/well counter examples succeeded validation
- has_input and has_inputs are both multivalued !? HOT 4
- we should emphasize reusability/reuse for recently added slots HOT 3
- we should use jsonschema temporal types instead of string ranges as appropriate HOT 2
- EMSL study identifiers HOT 5
- neon to nmdc-schema mappings
- prefix overhaul HOT 4
- work on enum and permissible value names/texts
- create `id` patterns for new classes in support of NEON
- New NEON process classes should have start and end dates. HOT 6
- really simple MongoDB to LinkML YAML converter HOT 1
- should Biosample.slot_usage.slot_usage include range: Study? HOT 2
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