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db-benchmarks-2021

Database benchmarks using RESCRIPt

docs

Source repository for https://docs.qiime2.org

feature-selection-qiime2

This repository describes the methods used to test different sci-kit learn feature selection methods as part of Qiime2 q2-classifier.

find_differential_primers

My fork of 'find_differential_primers'. Scripts to aid the design of differential primers for diagnostic PCR.

make_silva_db

General procedure for making QIIME 2 compatible SILVA reference files

misc_code

Simple and crude scripts that I've written for my own work that may be of help to others with similar tasks

proteoda

pycogent

My fork of 'PyCogent' : Official repository for software and unit tests

q2-assembly

QIIME 2 plugin for (meta)genome assembly.

q2-iqtree2

A full-featured IQ-TREE 2 plugin for QIIME 2.

q2-phylogeny

Phylogenetic reconstruction, and operations on phylogenetic trees.

q2-sidle

A QIIME 2 implementation of SMURF

q2-sourmash

Qiime2 Sourmash Plugin

q2-types

Definitions of common QIIME 2 types.

qiime

Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

rescript

REference Sequence annotation and CuRatIon Pipeline