mikessh Goto Github PK

aging-study

Metadata and some analysis for the T-cell repertoire aging study

cdrnbs-spark-sandbox

duplicates

Analysis of duplicate reads in Illumina sequencing

exome-misc

Miscellaneous tools for exome-seq: annotating SNP, counting molecules on start, etc

homebrew-repseq

Immune repertoire sequencing data analysis packages for Linux/MacOS.

igblast-bin

IgBlast v1.4.0 binaries dump for homebrew, etc. Please refer to official web page

jsres

Java implementation of Stochastic Ranking Evolutionary Strategy optimization algorithm.

juncstat

Some statistics over RNA-seq aligner junctions files

mageri

MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers

mageri-paper

Data and post-analysis for MAGERI project

migec

A RepSeq processing swiss-knife

migmap

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

mixcr

MiXCR is a universal software for fast and accurate analysis of T- and B- cell receptor repertoire sequencing data.

oncofuse

Predicting oncogenic potential of gene fusions

polyfid

Polymerase fidelity estimates

repseq-snippets

repseq-tutorial

Rep-Seq data analysis tutorial

seqcliutil

Some basic utils for operating FASTA files

vdj-standard

Tool suite for parsing V(D)J alignment results and produce AIRR standard format

vdjtools

Post-analysis of immune repertoire sequencing data

vdjtools-doc

THIS REPOSITORY IS DEPRECATED, FOR ISSUE TRACKER GO TO

vdjtools-examples

A set of real-world RepSeq datasets used for testing the VDJtools software