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analysis_tools

bsig

The breast cancer prediction method BSig identifies circulating miRNA signatures to distinguish breast cancer from healthy individuals.

cancersig

chromhmm-tools

Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)

docking

Docking project for COVID-19

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)

htsbox

My experimental tools on top of htslib. NOT OFFICIAL!!!

illuminus

A genotype calling algorithm for the Illumina BeadArray platform

musc_epi_browser

musc_epigenome_browser

network-inference-workspace

A collection of algorithms and bridges for bringing together different network inference techniques.

preprocessdb

process some annotation DB

readfq

Fast multi-line FASTA/Q reader in several programming languages

seqan

SeqAn's official repository.

somatic_calling

spikes

We propose a spike protein predictor SPIKES incorporating with an inheritable bi-objective combinatorial genetic algorithm to identify the biochemical properties of spike proteins and determine their specificity to human hosts.

sshpass

sshpass is a tool for non-interactivly performing password authentication with SSH's so called "interactive keyboard password authentication".

tba-symposium