minhtrung1997 Goto Github PK

actions-learning-pathway

actions-learning-pathway of github

ampliseq-test

Amplicon sequencing analysis workflow using DADA2 and QIIME2

angc_projector_format_code

apichat-pdf_script

Sử dụng API cho việc search và thảo luận với AI trên APIChat PDF và viết phụ lục luận văn

badread

a long read simulator that can imitate many types of read problems

benchmark

clean

A nextflow pipeline for decontamination of short reads, long reads and contigs

docker_sample

Một nơi chứa tất cả những code cần cho chuyến hành trình thám hiểm docker của chúng ta

docker_test

repo to test docker file

exercises

A collection of exercise

gapseq_kt

Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks, a kt version

genbank_to

Convert genbank files to a swath of other formats

hello-github-action

Tutorial for github action

hello-tower

Classic hello world script in Nextflow language for testing seqera

idseq-benchmark-manuscript

Analyses presented in the manuscript: IDseq – An Open Source Cloud-based Pipeline and Analysis Service for Metagenomic Pathogen Detection and Monitoring

kite-exercise

Repo for exercise 1 of KITE trainning

kraken2-modify-rsync

The version I use to fix the error of kraken2-build

kt-phyloherb

PHYLOgenomic analysis pipeline for HERBarium specimens, special version for kt

mag

Assembly and binning of metagenomes

minhtrung1997

Config files for my GitHub profile.

mitoz

MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes

nf-speciesid

Screening contaminants for Illumina short reads-thanks to Dr Thanh Lee

phageannotator

Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

thermonucleotideblast

Searching DNA/RNA sequence databases with PCR and/or probe queries

training-material

A collection of Galaxy-related training material

vrhyme

Binning Virus Genomes from Metagenomes