miura Goto Github PK

2016_pythoncourse

3d-dotdetection

3d_objects_counter

3dviewer_trackvisualization

analyzeskeleton

ImageJ/Fiji plugin to analyze 2D and 3D skeleton images

apeer-ijmacro-example

apeer_ijm_epidermalcell_tracking

apeer_ijm_findmaxima

apeer_ijm_remove_falsecelljunctions

apeer_macroextension

apeer_python_2d_plotter

bfimageconv

modified image converter for Ruben

bias2015-colocalisation-simulator

BIAS2015 Colocalisation Simulator

bias_chapter_imagejmacro

bias_chapter_tubularnetworkanalysis

bias_continuousreleaseprotocol

bias_introduction

sync with sharelatex

bias_nucleus_segmentation

biasbook_ch03_imagej_macro_language

bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

bioimageanalysisnotebooks

Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more

bise

Biii development repository

boryproject

segmentation and 3d linking (http://cmci.github.io/BoryProject/)

bosc2015

Content from BOSC2015 unconference sessions on building successful open source bioinformatics communities

calculatenearestneighbor

Assuming that coordinates are already in the ResultsTable, this macro lists nearest neighbors.

casperdatasets

CasperDatasets is a concise dataset modeling framework written in java. CasperDatasets was initially written in 2007, was added to the google code repository in 2009 (licensed under LGPL), and moved to github in Sept 2012.

cecad_course_iiam

CECAD Imaging Facility workshop: Introduction to Image Analysis in Microscopy (using Fiji)

cecog

A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.

cellclusterindex

Compute Degree of Cell Clustering using Nucleus Channel

cluster

Scripts for managing distributed computing