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MNI152 overlay of atlases about atlasreader HOT 5 CLOSED

miykael avatar miykael commented on August 22, 2024
MNI152 overlay of atlases

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Comments (5)

rmarkello avatar rmarkello commented on August 22, 2024

😍 😍 😍 Looks awesome!

Q1: Maybe the Talaraich atlases can be removed from the default atlases so that users who want them can add them but they're not included for those who don't know better? I agree that we shouldn't be responsible for normalizing the atlas, ourselves.
Q2: Maybe we can include a select few that are "representative" (e.g., AAL, DK, and Harvard Oxford) rather than all of them? They're very pretty (thanks, nilearn!).

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miykael avatar miykael commented on August 22, 2024

A1: I agree, Talairach should be removed.
A2: I think it's a good idea to have only a few as default. So, would you create an additional parameter default where only 3-4 are specified or would you overwrite all (which would be wrong, no?).

Q1 for everyone:

  • Ross proposes AAL, DK and HarvardOxford as default atlases.
  • I've never heard/seen the Aicha and Neuromorphometrics and never used Talairach. And I don't have a strong preference for DK or Destrieux. I've used Juelich but think I will be happier with AAL. Therefore, I'm all happy with Ross' proposal.

What do others think?

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danjgale avatar danjgale commented on August 22, 2024

I like the idea of AAL, DK, and HarvardOxford. Having just used atlasreader for a project, I found those to be the most reliable and helpful. Just to be clear, are we talking about atlas defaults in general (how I interpreted this), or if the atlases will be plotted by default?

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miykael avatar miykael commented on August 22, 2024

@danjgale, we're talking about atlas defaults. The plots were just to bring the topic to our attention.

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rmarkello avatar rmarkello commented on August 22, 2024

I actually initially meant for the atlas plots, but I do like the idea of having only a few as defaults, too! I'm happy with those three 👍 It might be good to show those three plots in the writeup, as well, to explain that they're the defaults 🙂

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