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mobiusklein avatar mobiusklein commented on May 27, 2024 1

Yes, that appears to be what happened. When the various IndexedXML implementations in pyteomics fail to find the ID in the index, they fall back to sequential lookup. I think this should be reasonably simple to fix within the day.

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mobiusklein avatar mobiusklein commented on May 27, 2024

Could you please check that you're getting the desired behavior with the most recent tag, v0.1.26? I'll be cutting a PyPI release shortly.

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bretttully avatar bretttully commented on May 27, 2024

That has fixed it, thank you for such a quick turn-around!!

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mobiusklein avatar mobiusklein commented on May 27, 2024

Thank you for using my work. I'll leave this issue open for a few days in case a problem arises from the fix. Otherwise, feel free to close it if you feel the issue is resolved.

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bretttully avatar bretttully commented on May 27, 2024

Have tested on a number of files now and all is well. Closing.

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