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Mahdi Morad Pour's Projects

bandage icon bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

hifiadapterfilt icon hifiadapterfilt

Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).

pbmm2 icon pbmm2

A minimap2 frontend for PacBio native data formats

pbsv icon pbsv

pbsv - PacBio structural variant (SV) calling and analysis tools

sv-benchmark icon sv-benchmark

Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data

truvari icon truvari

Structural variant toolkit for VCFs

usable_vcf icon usable_vcf

Run multiple programs to check if a VCF is usable

vcflib icon vcflib

C++ library and cmdline tools for parsing and manipulating VCF files

vcfr icon vcfr

Tools to work with variant call format files

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