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morris-lab's Projects
biddyetalworkflow
This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.
capybara
Capybara: A computational tool to measure cell identity and fate transitions
capybara_reproducibility
Reproducibility Repository for Capybara
celloracle
This is the alpha version of the CellOracle package
celloracle.documentation
celloracle_streamlit
Codes for celloracle web application
celltag-classifier
celltag-multi-2023
Repository for scirpts to re-produce all major analyses in the CellTag-multi paper
celltag-titration
Imaging-based titration software for GFP-Celltag lentivirus
celltagr
This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.
celltagviz
Repository of the CellTag Viz Shiny App
celltagviz-package
colony-counter
Python package for the quantificatin of number of colonies
newclonecalling
Repository detailing updated allowlisting and clonal analysis workflow
previousclonehunter
This repository contains our CellTag CloneHunter R package for clone-calling.
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