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augmentor

Data augmentation for training 3D convolutional nets

bastfruengeletal

cell-memory

cluster-tools

cluster-tools python library from the scalable minds mono-repo

connected-components-3d

Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants.

dataprovider3

DataProvider for Python3

deepinterpolation

elektronn3

A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomedical image data

ffn

Flood-Filling Networks for instance segmentation in 3d volumes.

gauss-em

Example that demonstrates computationally solving the order of unordered serial slices

gunpowder

A library to facilitate machine learning on multi-dimensional images.

isf-installer

Linux bash scripts used to automate the installation of 'In-Silico Framework' using Python 2 and Python 3.

isf-pandas-msgpack

In-Silico-Framework Pandas Msgpack

knossos_utils

Python library for interacting with KNOSSOS data sets and annotation files

msemalign

serial section multibeam scanning electron microscopy volume alignment

multiview

A program which calculates different optical measures in Opengl.

n2v

This is the implementation of Noise2Void training.

nways_multi_gpu

N-Ways to Multi-GPU Programming

pandas-msgpack

Pandas Msgpack

pylon-ros-camera

The official pylon ROS driver for Basler GigE Vision and USB3 Vision cameras:

pytorch-emvision

PyTorch models.

rcc-xcorr

A Python library to compute normalized 2D cross-correlation of images using GPU and multiprocessing.

rosbag2video

converts image sequence in ros bag files to video files

rviz_visual_tools_python

[Unofficial Python bindings] C++ API wrapper for displaying shapes and meshes in Rviz

sbmvivo

Sequential binding model for AP inference

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

swarm-scripts

scripts for a basic method of scaling on a SLURM HPC cluster

webknossos

webknossos python library from the scalable minds mono-repo

wkcuber

wkcuber from the scalable minds mono-repo

yolov8_ros

Ultralytics YOLOv8 for ROS 2