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Compile fail on CentOS about bart HOT 3 OPEN

mrirecon avatar mrirecon commented on May 28, 2024
Compile fail on CentOS

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Comments (3)

uecker avatar uecker commented on May 28, 2024

Try to set NOLAPACKE=1 in the Makefile.local

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Timsey avatar Timsey commented on May 28, 2024

Thanks for the quick reply!

That definitely did something, I now get the following error:

gcc -rdynamic -O3 -ffast-math -Wmissing-prototypes -std=gnu11 -fopenmp -Wall -Wextra -DNOLAPACKE -MMD -MF ./.bart.d -iquote /var/scratch/t bbakker/bart/src/ -Isrc/lapacke -I/usr//include/ -I/usr//include -DFFTWTHREADS -DMAIN_LIST="avg, bench, bitmask, cabs, caldir, calmat, car g, casorati, cc, ccapply, cdf97, circshift, conj, conv, copy, cpyphs, creal, crop, delta, ecalib, ecaltwo, estdelay, estdims, estshift, es tvar, extract, fakeksp, fft, fftmod, fftrot, fftshift, filter, flatten, flip, fmac, homodyne, index, invert, itsense, join, looklocker, lr matrix, mandelbrot, mip, moba, nlinv, noise, normalize, nrmse, nufft, ones, pattern, phantom, pics, pocsense, poisson, poly, repmat, resha pe, resize, rmfreq, rof, rss, sake, saxpy, scale, sdot, show, slice, spow, sqpics, squeeze, ssa, std, svd, tgv, threshold, toimg, traj, tr anspose, twixread, var, vec, version, walsh, wave, wavelet, wavepsf, whiten, window, wshfl, zeros, zexp, ()" -include src/main.h -Dmain_re al=main_bart -o bart src/main.c /var/scratch/tbbakker/bart/src/bart.o lib/libbox.a lib/libgrecon.a lib/libsense.a lib/libnoir.a lib/libite r.a lib/liblinops.a lib/libwavelet.a lib/liblowrank.a lib/libnoncart.a lib/libcalib.a lib/libsimu.a lib/libsake.a lib/libdfwavelet.a lib/l ibnlops.a lib/libmoba.a lib/libnum.a lib/libmisc.a lib/libnum.a lib/libmisc.a lib/liblapacke.a -L/usr//lib -lfftw3f -lfftw3f_threads -L/u sr//lib -llapack -lblas -lpng -lm
/cm/shared/package/gcc/4.9.2/bin/ld: skipping incompatible /usr//lib/libm.so when searching for -lm /cm/shared/package/gcc/4.9.2/bin/ld: skipping incompatible /usr//lib/libm.so when searching for -lm /cm/shared/package/gcc/4.9.2/bin/ld: skipping incompatible /usr//lib/libgcc_s.so.1 when searching for libgcc_s.so.1 /cm/shared/package/gcc/4.9.2/bin/ld: skipping incompatible /usr//lib/libgcc_s.so.1 when searching for libgcc_s.so.1 /cm/shared/package/gcc/4.9.2/bin/ld: skipping incompatible /usr//lib/libpthread.so when searching for -lpthread /cm/shared/package/gcc/4.9.2/bin/ld: skipping incompatible /usr//lib/libpthread.so when searching for -lpthread /cm/shared/package/gcc/4.9.2/bin/ld: skipping incompatible /usr//lib/libc.so when searching for -lc /cm/shared/package/gcc/4.9.2/bin/ld: skipping incompatible /usr//lib/libc.so when searching for -lc /cm/shared/package/gcc/4.9.2/bin/ld: skipping incompatible /usr//lib/libgcc_s.so.1 when searching for libgcc_s.so.1 /cm/shared/package/gcc/4.9.2/bin/ld: skipping incompatible /usr//lib/libgcc_s.so.1 when searching for libgcc_s.so.1
lib/libnum.a(blas.o): In function `blas_cgemm': blas.c:(.text+0x7e): undefined reference to `cblas_cgemm' lib/libnum.a(blas.o): In function `blas_matrix_multiply': blas.c:(.text+0xf7): undefined reference to `cblas_cgemm' lib/libnum.a(blas.o): In function `blas_csyrk': blas.c:(.text+0x18c): undefined reference to `cblas_csyrk' collect2: error: ld returned 1 exit status make[1]: *** [bart] Error 1

Followed by a bunch of Field 'name' not cached: and Field 'hname' not cached:.

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uecker avatar uecker commented on May 28, 2024

There are packages for CentOS 8. Does this help?

https://copr.fedorainfracloud.org/coprs/schaten/bart/

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