Comments (3)
msberends
commented on June 16, 2024
Hi, many thanks for bringing this up! We'll look into it. Do you happen to have a screenshot of the CLSI 2023 table where Gram-negatives (or at least, E. coli) is mentioned? And which antibiotic do you mean?
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a-cienfuegos
commented on June 16, 2024
Hi Dr. Berends, I attached a screenshot of the CLSI 2023 (Table 2A) and the clinical breakpoints table from the AMR package. The antibiotic is ampicillin-sulbactam. Thanks for your help.
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msberends
commented on June 16, 2024
Hi, many thanks for finding this. It appeared to be an error in the WHONET interpretation files that we used. We'll let them know.
Best,
Matthijs
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Related Issues (20)
- Clinical breakpoints for *Burkholderia mallei* and *Burkholderia pseudomallei* for all antibiotic might be wrong HOT 2
- Breakpoints prefer PK/PD
- NA converted to first defined custom micro-organism HOT 5
- UTI coding not being recognised in SIR interpretation HOT 12
- First isolate: ICU filtering based on wrong ordering
- typo in function name in tutorial for "Predicting future antimicrobial resistance using regression models" HOT 3
- In `clinical_breakpoints`, some values in `ref_tbl` are missing
- Problem with getting S. coagulans instead of old S. schleiferi coagulans
- `minimum_matching_score` not always considered
- Update clinical_breakpoints to WHONET 2023
- Rework EUCAST Expert Rules HOT 1
- how are IE cut-offs used in MIC graphs HOT 7
- Phenotype-based first isolate determination selects too many isolates HOT 1
- Decrease time in printing tibbles HOT 1
- Add `keep_synonyms = TRUE` to internal 1st isolate determination
- Add more LOINC codes for antibiotics HOT 1
- Support for working with multiple patient species for veterinary antibiograms? HOT 1
- MIC decimals on dark RStudio too black
- Improvements for `as.mic()` and MIC plotting
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