Comments (2)
Hey Darren, thanks for opening this issue. I added an enhancement
tag to it.
There is nothing in the code right now to do this. It's a feature that could be added without too much trouble, and I have plans to make updates this summer (but I can't promise anything).
For your purposes, is it important that the output of Cenote-Taker 2
never annotates ORFs below a minimum length? Or would you like to be able to edit .gbf files and regenerate .sqn files based on your edits?
Thanks,
Mike
from cenote-taker2.
Editing post hoc would be fine. Do Genbank Still accept sqn? I thought one had to submit the annotation table? - it is mainly that I would want easy way of regenerating the tbl and .gb files
from cenote-taker2.
Related Issues (20)
- Getting phage contigs even after "phage pruning" is set to true HOT 3
- Catalog content no_end_contigs_with_viral_domain HOT 2
- Contigs in the CONTIG_SUMMARY.tsv have neither ".rotate.fasta" nor ".tax_guide.blastx.out" HOT 1
- Pipeline hangs at PHANOTATE step HOT 6
- Error in script for VcontACT? HOT 1
- input reads (=megahit output) of cenote HOT 1
- How to include locus_tag or gene_id in gbf? HOT 2
- erro: Argument list too long when using latest cenote-Taker2.1.5 HOT 2
- erro:grep: sequin directory/*.fsa: No such file or directory when using latest cenote-Taker2.0.1 HOT 2
- BlastN "no high coverage hits HOT 3
- DTR removing HOT 1
- Quiet failure (strict mode option?) HOT 1
- cenote-taker2 vs (blastn nt & diamond nr) HOT 1
- Updates HOT 3
- DTR HOT 3
- ResolvePackageNotFound: - bbtools=37.62 HOT 1
- replace tbl2asn with table2asn
- ValueError: unsupported format character 'I' (0x49) at index 66 HOT 3
- ERROR: Invalid inference value tRNAscan-SE HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from cenote-taker2.