Comments (4)
jfjlaros
commented on September 2, 2024
Perhaps the mutator library is what you are looking for?
If it is, you might also want to have a look at the reticulate HOWTO.
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esebesty
commented on September 2, 2024
Thanks, the mutator library looks like a good start, although it doesn't seem to support all mutation types yet.
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jfjlaros
commented on September 2, 2024
Which types are you missing specifically?
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mihailefter
commented on September 2, 2024
@esebesty you can now also make use of the mutator from Mutalyzer3, which is also available on PYPI. Make sure that you enable and populate the cache for faster processing times.
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Related Issues (20)
- Mutalyzer configuration HOT 3
- "This is not an LRG record." error
- About the reference of 13:46108853 HOT 1
- Inconsistent results between mutalyzer and ref genome fasta HOT 2
- 2 allele descrption not recognized
- Position Converter error "not found in database" suggestion
- Position Converter "Chr" error suggestion
- Silent mutations HOT 1
- Alleles HOT 1
- HGVS link outdated
- submitBatchJob error HOT 3
- Inconsistent NameChecker results for transcript-reference disagree HOT 1
- IGV hg38 TTN gene no NM transcript id, only XM id HOT 2
- Emit warning on position correction
- Mutalyzer down? HOT 1
- Error When using local mutalyzer HOT 1
- intron numbering - missing warning HOT 3
- Local Mutalyzer runs slowly HOT 2
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