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Name: Michael Reimann
Type: User
Michael Reimann's Projects
atlas-enhancement
Tools to generate flatmaps of brain atlases & code to add barrel and barrel column annotations to Allen Mouse CCFv3
basic-connectomics
A jupyter notebook to explore basic connectomics concepts
bbptopologysscx
Brainstorming basin for topological inquiry regarding BBP SSCX
connecmap
A python toolbox to derive connectivity-based brain parcellation from a connectivity data.
cyber-saccades
An experiment to implement an attention system inspired by the human saccade system as a Keras layer
deciphering_variability
Analysis code for "Cortical reliability amid noise and chaos"
elementary_math
Some math exercises
excitation_inhibition_topology
Analyzing the topology of inhibitory to excitatory connectivity
glatex
Automatically download and compile latex code in a google doc, to facilitate collaborative work
hippocampus_spiking_analysis
A simple jupyter notebook illustrating a number of analysis of spiking activity in hippocampus simulations.
long-range-micro-connectome
BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome
multi-distribution-viz
For visualizations of the distribution of data with values for multiple categories
multi-index-viz
Visualizes a pandas.Series with a MultiIndex as a Sankey plot
multiscalecentrality
Graph centrality is a question of scale
nest-desktop
A web-based GUI application for NEST simulator
pyflagser
Python bindings and API for the flagser C++ library (https://github.com/luetge/flagser).
pyparticles
Particles simulation in python
snap
The Blue Brain Pythonic Simulation and Network Analysis Productivity layer
ssl_neuron
Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"
swisswatershed
Plotting all watersheds in Switzerland from official data sources
targeting_specificity_test
Evaluating the connectome analyses of a Science paper of the Helmstaedter group
topological-analysis-of-subvolumes
Mirror of the main repo on gitlab
topological_sampling-1
The analysis pipeline for the topological sampling project
visualize_layer_profiles
A visualization of the layer profiles of synaptic input predicted by the publicly available long-range mouse connectome of BlueBrain
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