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alphafold

Open source code for AlphaFold.

atacseq_pipeline

Ultimate ATAC-seq Data Processing & Analysis Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream processing and unsupervised analyses steps using bash, python, and R. Reproducibility is ensured by using conda and Singularity.

bioinflatexstyles

Bibtex compatible latex templates for a selection of Bioinformatics and Genomics journals

biostructmap

A Python package for mapping sequence aligned data onto protein structures

clair

Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling

course_2021_radboud

Radboud Summer Course 7/2021 https://www.ru.nl/radboudsummerschool/courses/2021/brain-bacteria-behaviour/

enrichment-analysis-training

Course material for Enrichment analysis course by SIB

immune_escape_calculation

Supplementary materials to Naung et al., 2023

metadeconfoundr

naung-et-al-2021

Bioinformatics Pipeline for MalariaGen's Pf3k and MalariaGen Community (PNG) WGS analysis which is used to characterise diversity analysis of vaccine candidate antigens

phyloseq-extended

Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" provided by the platforms Migale and Genotoul

probe-maker

Probe-Maker is intended for design of hybridisation probes for Plasmodium falciparum for long-read amplicon sequencing.

rh5_et_al

serology-of-vaccine-antigens

Differential patterns of naturally acquired immune responses to Plasmodium falciparum vaccine antigens with various levels of genetic diversity

sm-sniper

A snakemake pipeline that performs variant calling of Nanopore reads from FastQ files for non-model organisms

vaxpack

Population Genetic Analysis Gadget for Haploid Organisms