natacha-couto/Career_path
This repository describes my Career Path
Bioinformatics consultant, Genomics expert, Metagenomics enthusiastic
Repositories
natacha-couto/enteric-typer
Species-gated genotyping workflow for enteric pathogens (E. coli, Salmonella, Shigella) — MLST, AMRFinder, serotyping, SKA2 + IQ-TREE phylogenetics and annotation, publication-ready figures
natacha-couto/AMRgen
The AMRgen package provides tools for interpreting antimicrobial resistance (AMR) genes, integrating genomic data with phenotypic antimicrobial susceptibility testing (AST) data, and calculating genotype-phenotype associations.
natacha-couto/AMRrulemakeR
What the Package Does (One Line, Title Case)
natacha-couto/AMRrules
Interpretative standards for AMR genotypes
natacha-couto/GenepiK
An R package to perform genomics epidemiology