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bioconda-recipes

Conda recipes for the bioconda channel.

bioconda-utils

Utilities for building and managing bioconda recipes

bioperl-live

Core BioPerl 1.x code

bowtie2

A fast and sensitive gapped read aligner

cloudshell

Container Image for Azure Cloud Shell (https://azure.microsoft.com/en-us/features/cloud-shell/)

drush

Drush is a command-line shell and scripting interface for Drupal, a veritable Swiss Army knife designed to make life easier for those who spend their working hours hacking away at the command prompt.

espm2-2020

Artifact description for paper: N. Weeks, G. Luecke, G. Prabhu, "Refining Fortran Failed Images", 2020 [accepted]

exonerate

A fork of exonerate: a generic tool for sequence alignment

gbrowse-adaptors

gcc

htslib

C library for high-throughput sequencing data formats

igvr

Genome track visualization in your web browser, from R - a Bioconductor package

ipcmd

Command-line interface to SysV semaphores and message queues

mosaik

reference-guided aligner for next-generation sequencing technologies

mpich

Official MPICH Repository

nginx-container

Nginx high-performance HTTP server and reverse proxy container images based on Red Hat Software Collections and intended for OpenShift and general usage. Users can choose between Red Hat Enterprise Linux, Fedora, and CentOS based images.

opencoarrays

A parallel application binary interface for Fortran 2018 compilers.

pbdmpi

MPI bindings for the pbdR project.

root_digger

A tool to root phylogenies

rstudio-freebsd

RStudio Server, ported to FreeBSD 10.3. NOTE: there is now a FreeBSD RStudio port package; this repository exists for historical purposes as an example of an early effort to port RStudio Server to FreeBSD.

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

scripts

Sundry useful scripts

shiny-server

Host Shiny applications over the web.

shinycell

Shiny Interactive Web Apps for Single-Cell Data

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

terraform-azurerm-cloudshell-vnet

Terraform Module to provision all the resources necessary to connect Cloud Shell to an existing Azure VNET