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Zefeng Zhu👋

  • 2021.9-: PhD student at Peking University
  • 2017.9-2021.6: major in Bioinformatics at Soochow University (PRC), receive a Bachelor of Science degree

🔭 Summary

Basic Stats

Currently, I am working on programming and have a thirst for the insight of mathematical modeling, modern statistics, pattern recognition and so on. My involvement in science lays in the study of the protein tertiary structure.

👨‍💻 Programming Zone

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🌾 Second choice
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Zefeng Zhu's Projects

annoyingpdb icon annoyingpdb

A list of PDB chain instances with unexpected errors.

biopython icon biopython

Official git repository for Biopython (originally converted from CVS)

biozernike icon biozernike

Protein structure descriptors and alignment based on 3D Zernike moments.

datastructure icon datastructure

This repository stores codes about the knowledge of data structure, which mainly code in Java language.

deepaccnet icon deepaccnet

Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.

foldseek icon foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.

gemmi icon gemmi

macromolecular crystallography library and utilities

hardproteins icon hardproteins

Potential hard targets for protein structure prediction tasks.

muta3dmaps icon muta3dmaps

Muta3DMaps is a Python Package that retrieves, filtering and organizes data from various databases or tools via API to process the residue-level mapping between protein sequences and protein 3D structures.

naturegeorge icon naturegeorge

A special repository that serves for my public profile.

nemo icon nemo

Learning protein structure with a differentiable simulator

pdb-profiling icon pdb-profiling

Profiling Protein Structures from Protein Data Bank and integrate various resources.🏄‍♂️

probioinformatics icon probioinformatics

This repository stores the codes that record the user's learning process of programming in computational biology.

prody icon prody

A Python Package for Protein Dynamics Analysis

py_qcprot icon py_qcprot

A cython-based wrapper of the QCP C-code for RMSD calculation

pyrmsd icon pyrmsd

pyRMSD is a small Python package that aims to offer an integrative and efficient way of performing RMSD calculations of large sets of structures. It is specially tuned to do fast collective RMSD calculations, as pairwise RMSD matrices.

refold icon refold

Reproduction of computational studies of biomacromolecule structures.

resnetppi icon resnetppi

Predicting protein inter-chain residue distances from sequences irrespective of paired MSA.

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