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appliedgenomics2018

Materials for Spring 2018 Applied Genomics Course

asisterm

Asistente para la anotación y expansión de definiciones de conceptos médicos en español

becas-python

becas API client for Python.

bioabminer

Biomedical Abbreviation Miner (BioAB Miner)

cientifika

Cientifika app

clips

corex

CorEx or "Correlation Explanation" constructs a hierarchy of maximally informative representations of complex data.

cual-id

A package for creating and managing sample identifiers in comparative -omics datasets.

deepcc

a deep learning-based framework for cancer classification

easy-450k

Automated pipeline generator for illumina 450k array analysis

egasub

EGASUB - ICGC EGA Submission CLI

enviro-dashboard

Environmental monitoring (with Raspberry Pi sensors) and InfluxDB/Grafana

epibio

illumina-450k-analysis

From IDAT to beta.

iskylims

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

kaggle-seizure-prediction

solution for the American Epilepsy Society Seizure Prediction Challenge

mlml2r

Consistent simultaneous estimates of DNA methylation and hydroxymethylation using R

nci60example

Supplement and Rcode of Figures

ngscourse.github.io

NGS data analysis course

omicsintegrator

This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a network context.

omicsmaps

Omicsmaps code and data

pimeter

Smart energy usage meter for Raspberry PI

pymap

Python package for Methylation Analysis of Probes

regulatory-prediction

Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on Computational Biology

rnaseqtopicmodeling

A repository for research work involving topic modeling RNA-seq data.

saucie

scrna.seq.course

Analysis of single cell RNA-seq data course, Cambridge University, UK

seguimientopacientes

seizure-prediction

American Epilepsy Society Seizure's Prediction Challenge Kaggle Competition

smartee

Smart Plug Controller