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sankar basu's Projects

chromnum icon chromnum

Chromatic Number of a graph: The minimal number of non-degenerate set of colors by which all nodes of a 'undirected' graph is colorable, such that no two adjascent nodes share the same color.

cpdock icon cpdock

The Complementarity Plot for protein - protein docking

db2 icon db2

A database of monomeric globular proteins which has been extensively used in several studies to probe protein internal architecture, fold recognition and structure validation.

db3 icon db3

A database of protein-protein complexes consisting of 1879 co-crystallized interacting native structures (each containing two chains) with resolution better than 2 Å, and no missing backbone atoms.

dockq-fortran-code icon dockq-fortran-code

DockQ: A quality measure for PPI complexes based on "CAPRI evaluation protocol"

fusionimaging_mfm icon fusionimaging_mfm

Software for Analyzing Magnetic Images by a Fusion Imaging Approach to Study Nanoscale Surface Distribution of Magnetic Force

poldnamelt icon poldnamelt

Local Melting in polymeric DNA: Melting Thermodynamics of a Contiguous polymeric ds-DNA in solution (with absolute base pairing complimentarity) spliting it into sizes of preferred window & overlap by the user

proqdock icon proqdock

ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support Vector Regression algorithm. The current version has 13 features: both all-atom and interface features. ProQDock should also serve to develop hybrid methods in future attempts to solve this 'hard' problem.

proteus icon proteus

Proteus is a Random Forrest based classifier to predict the 'disorder-to-order' transitioning binding residues (called 'protean') given the sequence of an Intrinsicall Disordered Protein (IDP)

sarama-updated icon sarama-updated

Complementarity Plot : A structure validation tool for globular proteins

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