Sleiman Bassim's Projects
Interactive R, function dev in Rmd files
de novo sequence assembler
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
Bibtex keys
Alignment transcriptome to genome
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models
A JavaScript visualization library for HTML and SVG.
Database of embassies and consulates
dotfiles for my elementary OS workbench
R scripts for BigData
JupyterLab computational environment. This is a very early preview, and is not suitable for general usage yet.
Interactively explore metagenomes and more from a web browser.
Blog summarizing most important codes I have written
JavaScript (node + browser) bioinformatics library for nucleotide sequence manipulation and analysis.
A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.
Machine learning and bioinformatic workflows for gene discovery.
R scripts for human and marine data analysis
Toolkit for processing sequences in FASTA/Q formats
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Statistical genetics