neuro-ml Goto Github PK

alssl

amid

Awesome Medical Imaging Datasets

anchor-free-genant

bev

Flexible version control for files and folders

bidstransformers

BIDS Transformers for neuroimaging data preprocessing based on BIDS and sklearn architecture

brats

BraTS competition

connectome

A library for datasets containing heterogeneous data

connectome-tutorials

covid-19-triage

curve-detection

deep_pipe

A collection of tools for deep learning experiments

dicom-csv

Utils for gathering, aggregation and handling metadata from DICOM files

domain_shift_anatomy

Code release for the paper I. Zakazov, B. Shirokikh et al. "Anatomy of Domain Shift Impact on U-Net Layers in MRI Segmentation" (MICCAI 2021, oral).

dpipe_mnist

A short deep_pipe example

dpipe_tutorial_notebooks

edr-gp

A library for sparse Effective (functional) Dimensionality Reduction via Gaussian Processes

imops

Efficient parallelizable algorithms for multidimensional arrays to speed up your data pipelines

inverse_weighting

Code release for the paper B. Shirokikh, A. Shevtsov et al. "Universal Loss Reweighting to Balance Lesion Size Inequality in 3D Medical Image Segmentation" (MICCAI 2020, oral).

kerops

Efficient operations on GPU

low-resolution

Code release for the paper B. Shirokikh, A. Shevtsov et al. "Accelerating 3D Medical Image Segmentation by Adaptive Small-Scale Target Localization"

midline-shift-detection

Full code for the paper "Incorporating Task-Specific Structural Knowledge into CNNs for Brain Midline Shift Detection"

prni2016

pycharm-connectome-support

Connectome Support for PyCharm

reskit

A library for creating and curating reproducible pipelines for scientific and industrial machine learning

resnet_cnn_mri_adni

Code for Residual and Plain Convolutional Neural Networks for 3D Brain MRI Classification paper

scipy_proceedings

Tools used to generate the SciPy conference proceedings

static-yoga

straighten

Interpolation along multidimensional curves

structural-connectome-validation-pairwise

Repository for paper 'Structural Connectome Validation Using Pairwise Classification'

tarn

An insanely customizable framework for key-value storage 💾