Comments (7)
from quick look looks like an old git
Documentation/RelNotes/2.8.0.txt: "git config" learnt a new "--show-origin" option to indicate where
For versions used consult output of datalad wtf -S dependencies
and if on posix, you can use which -a git
to see which git
you are using and which others might be available in the PATH
. Conda is coming with git
and it is recent, https://anaconda.org/anaconda/git - shows >= 2.19 across board... so how/which git
do you use? which also git-annex since there is no git annex (2.0.1)
afaik in anyone's life any longer if ever was. https://anaconda.org/conda-forge/git-annex shows git-annex 10.20230626
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The solution to this problem was that I cloned the repository with git; however, I was trying to save and push the dataset with datalad. What fixed the issue was using Datalad to both clone and save/push the dataset instead of using git.
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pinging @yarikoptic in case he has any quick suggestion.
@gaiborjosue - could you post what platform (linux, macos, windows) and python environment (conda, virtualenv) you are using for datalad? also have you searched for that error to see what shows up?
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@gaiborjosue - what are the specific versions (git, git annex, and datalad) that you are using?
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@gaiborjosue - what are the specific versions (git, git annex, and datalad) that you are using?
I am using these versions: git(2.7.0), git annex (2.0.1), datalad (0.19.2)
@gaiborjosue - could you post what platform (linux, macos, windows) and python environment (conda, virtualenv) you are using for datalad? also have you searched for that error to see what shows up?
I am using Linux, and Conda. I have searched for the error, but there is not apparent solution.
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i would then suggest posting on datalad with a simple replication example if you can.
clone a repo
add something with git annex add-url
try saving
also, does the error change when you add from a different url?
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@satra I just looked into this myself and @yarikoptic is correct. Running module load openmind/git-annex/2.0.1
reverts us to an older version of git which datalad fails to work with. @gaiborjosue One temporary fix is to install git-annex using conda install -c conda-forge git-annex
and go from there. The other fix is to open an issue on OpenMind and request an updated module for git-annex.
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Related Issues (20)
- Unable to run issues-helper@v3 in the workflow HOT 1
- Disable running action everytime an issue is commented/replied HOT 6
- Include a license file for every model that's included
- Push docker image to hub with tag HOT 2
- Path to data in test command should be absolute and relative
- cleanup singularity test command in new_model.yml and update_model.yml HOT 2
- Inconsistent actions/checkout version in new_model.yml
- the steps failed and success are duplicated except for the value and message in new_model.yml HOT 1
- fix(Singularity&Datalad): Fixed singularity command and datalad installation on EC2
- removing files from datalad/annex does not remove them from osf HOT 5
- datalad push fails to find storage targets in the add/update model workflow HOT 1
- New Model: PialNN/pialnn/1.0.0 HOT 4
- improve workflow to perform all operations on self-hosted runner HOT 7
- spec.yaml is not updated correctly HOT 5
- Fix(modelData): Fix the get model data workflow HOT 2
- Delete issue branch if workflow fails HOT 7
- Add model_card.yaml to current models
- Replace git checkout with datalad checkout in action workflows wherever appropriate HOT 6
- storing models in multiple remotes
- Add GRACE to model zoo
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