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Datalad Save Error about trained-models HOT 7 CLOSED

gaiborjosue avatar gaiborjosue commented on September 16, 2024
Datalad Save Error

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Comments (7)

yarikoptic avatar yarikoptic commented on September 16, 2024 1

from quick look looks like an old git

Documentation/RelNotes/2.8.0.txt:   "git config" learnt a new "--show-origin" option to indicate where

For versions used consult output of datalad wtf -S dependencies and if on posix, you can use which -a git to see which git you are using and which others might be available in the PATH. Conda is coming with git and it is recent, https://anaconda.org/anaconda/git - shows >= 2.19 across board... so how/which git do you use? which also git-annex since there is no git annex (2.0.1) afaik in anyone's life any longer if ever was. https://anaconda.org/conda-forge/git-annex shows git-annex 10.20230626

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gaiborjosue avatar gaiborjosue commented on September 16, 2024 1

The solution to this problem was that I cloned the repository with git; however, I was trying to save and push the dataset with datalad. What fixed the issue was using Datalad to both clone and save/push the dataset instead of using git.

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satra avatar satra commented on September 16, 2024

pinging @yarikoptic in case he has any quick suggestion.

@gaiborjosue - could you post what platform (linux, macos, windows) and python environment (conda, virtualenv) you are using for datalad? also have you searched for that error to see what shows up?

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satra avatar satra commented on September 16, 2024

@gaiborjosue - what are the specific versions (git, git annex, and datalad) that you are using?

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gaiborjosue avatar gaiborjosue commented on September 16, 2024

@gaiborjosue - what are the specific versions (git, git annex, and datalad) that you are using?

I am using these versions: git(2.7.0), git annex (2.0.1), datalad (0.19.2)

@gaiborjosue - could you post what platform (linux, macos, windows) and python environment (conda, virtualenv) you are using for datalad? also have you searched for that error to see what shows up?

I am using Linux, and Conda. I have searched for the error, but there is not apparent solution.

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satra avatar satra commented on September 16, 2024

i would then suggest posting on datalad with a simple replication example if you can.


clone a repo
add something with git annex add-url
try saving

also, does the error change when you add from a different url?

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hvgazula avatar hvgazula commented on September 16, 2024

@satra I just looked into this myself and @yarikoptic is correct. Running module load openmind/git-annex/2.0.1 reverts us to an older version of git which datalad fails to work with. @gaiborjosue One temporary fix is to install git-annex using conda install -c conda-forge git-annex and go from there. The other fix is to open an issue on OpenMind and request an updated module for git-annex.

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