neurospin Goto Github PK

blizzard

Package to generate/request a filesystem reference.

brain_age

Predict age from brain anatomy measures of Grey Matter (GM) volumes.

brainomics

Brainomics project deliverables

brainomics2

Business logic for population imaging

bronco

c_unet

Pytorch implementation of a G-CNN with a U-Net architecture, using discrete 3D roto-translational equivariant convolutions, to segment the hippocampal subfields on 3D MRIs.

caps-clindmri

Clinical dMRI

caps-mmutils

Multi modal utilities

cc-parcellation-from-tractography

Parcellation of the mid-sagittal section of the corpus callosum based on bilateral homotopic connectivity

colorado

interactive 3D plots in juptrer notebooks

deep_folding

dico_toolbox

a pythonic toolbox for Brainvisa entities

dynacomp_mf_analysis

Python scripts for multifractal analysis of source-reconstructed MEG time series (Dynacomp protocol)

fmri_workshop

Material for fMRI training that takes place at Neurospin

gadgetron

The Gadgetron is an open source framework for medical image reconstruction.

genibabel

https://genibabel.readthedocs.io/en/latest

gondova_2023

Code for Gondova et al., 2022 (Neuroimage: Reports)

highres-cortex

Analysis tools for sub-millimetre MRI of the cerebral cortex

hiplay7

hsf

Hippocampal Segmentation Factory (HSF). A one-liner Deep Learning tool to segment raw T2w (and T1w) MRIs into hippocampal subfields in few seconds. Trained on 700+ manually segmented hippocampi.

hsf_train

Training code for the Hippocampal Segmentation Factory

import_scans

scripts to import MRI scans from neurospin's acquisition database

localizer

Brainomics/Localizer

lsrc2

LimeSurvey RemoteControl 2 API client library

meg_study_dynamic_scales

On the relationship between 1/f and periodic brain dynamics (alpha-band oscillations)

meg_study_kepi

mttmeg

Code dedicated to the analysis of MTT M/EEG experiment

netsgcca

netSGCCA in Python

neumane_2022

Code for Neumane et al., 2022 (Frontiers in Human Neuroscience)

neuro-forge

Provisioning of neuroimaging workspace for image processing and data analysis