Comments (1)
none of nextstrain python is currently python3 conform. We should address that soon though. unicode is the default string in python3 and the decode behavior has changed.
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Related Issues (20)
- Geographic error? HOT 2
- Switch out `xlrd` HOT 1
- fauna downloads fail with Python 3.10
- PhantomJS not found on PATH - installation via npm install HOT 2
- Set `serum_id` to `lot_number` for CDC titer imports HOT 4
- feat: BV-BRC support HOT 2
- serum_passage_category should be set to "egg" instead of "cell" for CDC human pool data like "L21/22 H3-EGG HUMAN POOL" HOT 7
- Assign correct host to titers from non-ferret hosts (e.g., human and mouse)
- Geolocation assignments fail for duplicate location names HOT 2
- Replace nextstrain remote with aws commands HOT 1
- Automate backup of Fauna databases to S3 HOT 4
- Support ingest of individual-level human serology data for seasonal flu viruses
- Revisit tdb/upload's `index_fields` HOT 1
- Publish to pypi and then bioconda HOT 1
- Parse VIDRL human sera pool measurements HOT 2
- Revisit ingestion of VIDRL flat files
- Decouple data curation and upload
- Migrate to pandas 0.17 HOT 6
- Fauna installation fails for some users who don't run `npm install` inside of `/chateau` HOT 3
- fauna doesn't work with rethinkdb 2.4 HOT 3
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