nf-core Goto Github PK
Name: nf-core
Type: Organization
Bio: A community effort to collect a curated set of analysis pipelines built using Nextflow.
Twitter: nf_core
Blog: http://nf-co.re
Name: nf-core
Type: Organization
Bio: A community effort to collect a curated set of analysis pipelines built using Nextflow.
Twitter: nf_core
Blog: http://nf-co.re
Files for the @nf-core GitHub organisation
Instructions and scripts for custom GitHub Actions runners
B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
Amplicon sequencing analysis workflow using DADA2 and QIIME2
ATAC-seq peak-calling and QC analysis pipeline
CloudFormation templates to setup the aws megatests necessary cloud infrastructure
Simple bacterial assembly and annotation pipeline
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
Converts bam or cram files to fastq format and does quality control.
Hosts the content of the basic nf-core training on how to create nf-core pipelines with `nf-core create`
CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.
A pipeline for processing calling cards data
ChIP-seq peak-calling, QC and differential analysis pipeline.
Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
Config files used to define parameters specific to compute environments at different Institutions
DEPRECIATED! Please use nf-core/tools instead
Coprolite host Identification pipeline
Generate Panel of Normals, models or other similar references from lots of samples
Parallelised and automated construction of metagenomic classifier databases of different tools
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
[WIP] Evaluate outcomes from genome editing experiments
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
nf-core/datasync is a system operation pipeline that provides several workflows for handling system operation / automation tasks
Quantitative shotgun MS proteomics
Please consider using/contributing to https://github.com/nf-core/sarek
nf-core/demo is a simple nf-core style bioinformatics pipeline for workshops and demos.
Demultiplexing pipeline for sequencing data
UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.