nfmathieu94 Goto Github PK
Name: Nathan Mathieu
Type: User
Name: Nathan Mathieu
Type: User
Running bwa short read aligner on
Trying to find Ping locations by starting from basic first principles
Directory for running Jinfeng's code for finding Ping. This directory is also found in the Rice_Rice_Baby team in the Stajich Lab github.
Running two scripts (PickPing.py and PickPong.py) that use RelocaTE2 output to determine Ping and Pong locations.
github-fundamentals-nfmathieu94 created by GitHub Classroom
My kickstart nvim configuration
Code for building a simulated genome with insertions added and generating short read data. Directory is located in the Rice_Rice_Baby team in Stajich Lab.
A directory with code relevant to finding what genomic features mPing is landing in.
Configuration for nvim
Project is designed around the manipulation of Relocate2 results. The goal is to have a place for code that is used to create combined insertion table.
ReLocaTE code for identifying Transposons (TE) in genomes using re-sequencing data
Testing RelocaTE2 parts and parts that might be added.
Work relevant for detection of structural variation and their correlation to proximal mPings.
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