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allensdk

argschema

This python module simplifies the development of modules that would like to define and check a particular set of input parameters, but be able to flexibly define those inputs in different ways in different contexts.

bioinformatics

HEAT Genomics Tools

chess-alpha-zero

Chess reinforcement learning by AlphaGo Zero methods.

computation-thru-dynamics

Understanding computation in artificial and biological recurrent networks through the lens of dynamical systems.

dissertation

My PhD dissertation

docker-stacks

Ready-to-run Docker images containing Jupyter applications

dogfinder

dotfiles-1

@holman does dotfiles

expressvpn-python

ExpressVPN - Python Wrapper (public IP auto fetch)

fijiscripts

gui

Software for electrophysiology data acquisition

image_version2.4

jaratest

Collection of test scripts

jaratoolbox

Data analysis toolbox for JaraLab

jax

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

jupyterlab-vim

:neckbeard: Vim notebook cell bindings for JupyterLab

lfads_fork

Fork of LFADS code adapted for easier setup. Original: https://github.com/lfads/models/blob/master/research/lfads/README.md

mind

Implemenation of Manifold Inference from Neural Dynamics (MIND) from Low & Lewallen et. al, '18

ml-flow-ds-project

PySpark / MlFlow project template

models

Models and examples built with TensorFlow

probabilistic-programming-and-bayesian-methods-for-hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

remindme

som_visualization_r

Some functions for visualizing output from the "kohonen" R library

sompy

A Python Library for Self Organizing Map (SOM)

spikesort

Spike sorting library implemented in Python/NumPy/PyTables

subspace-clustering

Toolbox for large scale subspace clustering

swdb_2019-1

Repository for course materials for the Summer Workshop on the Dynamic Brain 2019

taskontrol

A system for controlling behavioral experiments.

tensortools

Fitting and visualizing tensor decompositions in Python