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2019_goby_abc_scripts

A collection of R and Linux scripts used to conduct simulations associated with an approximate Bayesian computation analysis of Round Goby colonization patterns in the Great Lakes.

fitr

geneticdifferentiation

Code snippets to calculate genetic differentiation in R. See posting at: XXXX

grandparentage

R scripts used in a grandparentage to calculate the expect proportion of offspring with unassigned parents due to genotyping error and missing genotypic data. In addition, I provide a script to identify unassigned parents using known grandparent mate pairs and grandoffspring genotypes.

hunter_2019_sturgeon_simulations

mater

This package simulates breeding matrices for pedigree reconstructions

microsats_popgene_stats

This repo has some scripts to help users work with microsatellite data in R

pedigree-accumulation-2021

This repo contains all code associated Sard et al. 2021

rrs

Example of how to do a relative reproductive success comparison

sibship_relatedness_pipeline

This repo has some scripts I use when evaluating the power of a set of microsatellites has when calculating relatedness between individuals in a sample

sourcescripts

test_mater

This package simulates breeding matrices for pedigree reconstructions

west_coast_map

Making maps of the west coast