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Name: Noushin Niknafs
Type: User
Company: Johns Hopkins University
Location: Baltimore, MD
Name: Noushin Niknafs
Type: User
Company: Johns Hopkins University
Location: Baltimore, MD
JHU EN.600.649: Computational Genomics: Applied Comparative Genomics
Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for manuscript https://doi.org/10.1016/j.cell.2017.09.028 See also http://www.ioexplorer.org for interactive visuallization
Tools to annotate a list of genes/mutations for causal implications of genes in cancer
Copy number variant detection from targeted DNA sequencing
Analysis of Cancer Genomes; 2017 edition
Summer school course materials collection
The Datasaurus Dozen datasets
This houses some of my experiments with the Edward probabilistic programming language from http://edwardlib.org/
Create timecourse "fish plots" that show changes in the clonal architecture of tumors
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
Script to automatically create and run IGV snapshot batcscripts
JHU Thesis Template
Latex template for writing papers
Generate allelic depth table for a set of mutated genomic positions from a bam file
NGSTools
Copy number calling and variant classification using targeted short read sequencing
Shared code for realignment processing of Exome data
Code and content for "Tidy Modeling with R"
A little word cloud generator in Python
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.