Name: Nima Rafati
Type: User
Company: National Bioinformatics Infrastructure Sweden, SciLife lab, Uppsala University
Bio: Bioinformatics Data Scientist at NBIS, Uppsala university.
I have been working with NGS in wild/domestic pops; assembly, annotation, ASE, population genetic
Twitter: nimra236
Location: Uppsala
Blog: https://mtbioinformatics.wordpress.com/
Nima Rafati's Projects
Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.
testing GUI
In this repository you can find useful scripts related to annotation or manipulating annotation files.
Collection of scripts for annotation
This repository provides codes and analyses pipeline for discovery of Atlantic Herring sex chromosome
📚 Tools and databases for analyzing HLA and VDJ genes.
bwa_samtools dockerfile/image
In this repository you can find different recipes.
In this repo you can find dockerfiles to generate container(s)
Here you can find useful script to convert different formats
This repository you can find information on how to use available public data related to covid and visualise them.
A list of deep learning implementations in biology
In this repository you find scripts used to parse depth differences between populations/samples (mostly pool-seq)
In here you find notes about excel
In this folder you can find few scripts for assessing your FASTA file (such as N50, GC-content,....)
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
Genome Assembly and Annotation Service code
12 Lessons, Get Started Building with Generative AI 🔗 https://microsoft.github.io/generative-ai-for-beginners/
A collection of scripts and notes related to genomics and bioinformatics
Fast git tutorial in farsi
Collection of papers and codes for OMICS integration
Repository to do image deconvolution on ISS datasets using Flowdec
React
Typescript
Django
Laravel
Facebook
Microsoft
Google
Alibaba
D3
Tencent