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.rc-files-and-scripts

My .vimrc, .zshrc, .ideavimrc files and custom scripts for the terminal

api-server

Open-source FHIR Server to support patient- and clinician-facing apps

biolmai-feedstock

A conda-smithy repository for biolmai, used for bumping biolmai versions on conda-forge.

data-science-engineering-projects

Some of recent my data science and software engineering projects

datasharing

The Leek group guide to data sharing

demo-js-phylo

Automatically exported from code.google.com/p/demo-js-phylo

ehrcorral

EHRCorral cross-matches and links electronic medical records for the purpose of de-duplication

flask_ml

HS 698

hs616

Projects and homework for USF's HS616 - Statistical Computing for Biomedical Data Analysis

hs698-vagrant

Example VM for HS 698

installer

Ansible + Vagrant installers for SMART on FHIR

jsphylosvg

keepingyouawake

A Caffeine clone for OS X Yosemite (and Dark Mode).

medicare-claims-query-api

A simple Flask app for loading CMS 2008-2010 claims and creating a REST service to query the data

mimic-code

MIMIC Code Repository: Code shared by the research community for the MIMIC-III database

mimic-ii-vm

Download and load MIMIC-II into a PostgreSQL DB on an Ubuntu VM

mimic-iii-vm

Download and load MIMIC-III into a PostgreSQL DB on an Ubuntu VM

my-project

Test project from Git Mini-Course

paramz

Fixed for recent Numpy: Parameterization Framework for parameterized model creation and handling

receptormarker

Source for 'receptormarker' package for R: antibody receptor and phenotypic marker analysis

regressors

Easy utilities for fitting various regressors, extracting stats, and making relevant plots with scikit-learn models

shinyvm

Create a local Shiny Server for R

smart-flask-app

Basic Flask app to support Backend Auth and patient data retrieval

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

statprog

Statistical Computing for Biomedical Data Analytics

transformers

Debug Transformers

trello-geektool

An applescript to view your assigned cards from Trello