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Nicolas Vannieuwkerke's Projects

annotsv icon annotsv

Annotation and Ranking of Structural Variation

bedgovcf icon bedgovcf

A simple tool to convert BED files to VCF files

configs icon configs

Config files used to define parameters specific to compute environments at different Institutions

multiqc icon multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

nextflow icon nextflow

A DSL for data-driven computational pipelines

nextflow-demo icon nextflow-demo

A demonstration on how to easily run a Nextflow pipeline and how easy it is to create one

nf-co.re icon nf-co.re

Code and files for the main nf-core website.

nf-core-modules icon nf-core-modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nf-dynamic-containers icon nf-dynamic-containers

A script to dynamically fetch conda/containers from bioconda/biocontainers for nextflow pipelines

nft-bam icon nft-bam

An nf-test plugin for reading the contents of SAM/BAM/CRAM files in assertions

pipeception icon pipeception

A small POC pipeline testing out how to run pipelines inside of another pipeline

python-scripts icon python-scripts

A repository containing a collection of some useful small Python scripts I wrote

seqr icon seqr

web-based analysis tool for rare disease genomics

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