nygenome Goto Github PK
Name: New York Genome Center
Type: Organization
Twitter: nygenome
Location: New York, NY
Blog: http://www.nygenome.org
New York Genome Center's Projects
absinthe
compass
conpair
Concordance and contamination estimator for tumor–normal pairs
cotton
A library of useful functions for managing deployments with Fabric.
lancet
Microassembly based somatic variant caller for NGS data
lancet2
v2.x of the microassembly based somatic variant caller
metronome
Visual Data Exploration for Genomic Medicine
nygc-pdx-mouse-read-filter
nygc-short-alignment-marking
pedselect
Select most informative individuals to sequence from a pedigree
prostatebrainmet_wgs_paper_figures
This repository contains the code necessary for reproducing the figures and custom analysis in the following manuscript: Evolution of Structural Rearrangements in Prostate Cancer Intracranial Metastases
scanvis
SCANVIS - a toolkit for SCoring, ANnotating and VISualizing splice junctions
taxmaps
Ultra-efficient taxonomic mapping of NGS data
telomeasure
Telomeasure estimates average telomere length from whole genome sequencing (WGS) BAM files.
topmed_unmapped
urothelialcancer_wgs_paper_figures
This repository contains the code necessary for reproducing the figures and custom analysis in the following manuscript: The Interplay between Mutagenesis and Extrachromosomal DNA Shapes Urothelial Cancer Evolution
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