Comments (3)
Could you change the code after you bring back dev to work?
Sure thing, but what do you mean about dev not working?
Edit: pasting e-mail reply:
The dev is working fine the problem was from binder.
Now everything is working for all organisms except for two functions:
DEGanalysis2clust()
DEGanalysis()
You can see that in the "DIscBIO-CONQUER Notebook": https://github.com/ocbe-uio/DIscBIO/blob/dev/notebook/DIscBIO-CONQUER%20Notebook.ipynb
The ClustDiffGenes() is working although the output does not show the gene symbol name but that is fine. It would be great if we can do in the future the same for DEGanalysis2clust() and DEGanalysis().
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@SystemsBiologist, it looks like commit c9313b5 has already implemented the changes in the OP, should this issue be closed then? What about the problems posted, i.e.:
The problem will be in 3 functions (DEGanalysis2clust, DEGanalysis and ClustDiffGenes)
The outcome of ClustDiffGenes() is not perfect but it is OK
The main problem is in DEGanalysis2clust and DEGanalysis. They are not working at all.
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You can close this one since you have created a "To do list"
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Related Issues (20)
- ClustDiffGenes is generating opposite tables HOT 3
- DIscBIO doesn't install HOT 1
- Failing TravisCI builds HOT 2
- Networking outputs different network from hyperlink HOT 2
- PPI error HOT 1
- Remove calls to KmeanOrder from notebook
- Replace call to boot() from Jaccard() HOT 2
- Standardize function names HOT 1
- Retry URLs on Networking and PPI functions HOT 1
- Unable to view code of Binder notebook HOT 1
- Reorganize internal functions
- Aggregate K/MB selection into one function HOT 1
- The PPI function is writing to the user's disk HOT 4
- Recreate unit tests
- Unit tests failing
- Fix linting
- Binder links on README point to dev
- Binder failing to start
- Loading count matrix from 10x dataset in DIscBIO HOT 6
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