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bio-tool

bioinfo_gui_scripts

python scripts that can be easily trasformed to gui programs for wet lab scientists to use

biomisc

collection of miscellaneous command line bioinformatic scripts

biomisc_julia

collection of miscellaneous command line bioinformatic scripts written in julia for speed

biomisc_r

command line bioinformatic scripts written in R

codon_optimize_cds_with_many_taxids_multifasta

Linux GUI app to codon optimize a multi-fasta file with coding sequences with multiple taxonomy ids

codon_optimize_cds_with_many_taxids_singlefasta

Linux GUI app to codon optimize many single-fasta files with coding sequences , using many taxonomy ids

cpg_island_identificator

CpG island identification pipeline inspired by the Gardiner-Garden and Frommer (1987) method

cpg_island_identificator_julia

CpG island identification using the Gardiner-Garden and Frommer (1987) method that exports the results in a txt file containing the id, start, end, strand, gc content and obs/exp ratio

fsk-auto-timeline

Automated timeline create of standardized fungal transformation, using Python

gene-isoform-collector

Windows and linux GUI and command line app that searches and exports the isoforms of each input gene loci

igem-distribution

Repository for collective design of an iGEM DNA distribution

pdb_viewer_binder

binder to visualize structures from pdb files

pdbs_secondary_structure_statistics

Linux GUI Program to calculate the percentage of each secondary structure for each input pdb file in a user specified directory

protein_physicochemical_properties_calculator

ProtParam based program that outputs the id, pI, charge and molecular weight of each protein

retrieve_n50_l50_n90_l90

command line and GUI scripts that retrieve the N50, L50, N90 and L90 values by indexing input multi-fasta files

rosalind

sirna-mapped-to-niben-length-distribution

split_multi_fasta

GUI that splits a multi fasta file into single fasta files

tabtk

Toolkit for processing TAB-delimited format

tm_calculator_gui

Calculates the melting temperature(in Celsius) of a user imported forward and reverse primer based on primer blast default parameters & pcr additives

trigonometric_and_logarithmic_calculator

calculates basic trigonometric, logarithmic and exponential with Euler's number as base values, using user input

ytconverter

simple command line tool to download video to mp3 from youtube