Comments (2)
Hi,
PolyFun needs genome-wide data to estimate functional enrichment. Just data from the target locus is not enough. If you don't want to compute functional enrichment from genome-wide data yourself, you can use the meta-analyzed values that we provide (please see the wiki for details).
I hope it's clear, please reopen and let me know if not.
Best,
Omer
from polyfun.
from polyfun.
Related Issues (20)
- Flag --n of finemapper.py confused `conda run -n polyfun` HOT 4
- susie_suff_stat no longer accept bhat input HOT 2
- LD matrix genome assembly HOT 1
- Locus has no credible set HOT 1
- Missing LD files HOT 1
- Some question about "best-practice recommendations" in article HOT 7
- Some problems in Computing LD-scores using existing functional annotation files HOT 8
- Missing SNPs in merging summary statistics with reference panel HOT 1
- TypeError: __init__() got an unexpected keyword argument 'normalize' HOT 6
- AttributeError: module 'networkx' has no attribute 'from_numpy_matrix' when I use arg --hess HOT 4
- The warning: IBSS algorithm did not converge in 100 iterations! HOT 2
- Scaled prior variance should be no greater than 1 when standardize = TRUE HOT 4
- Bgen input with an error caused by an incorrect variable invocation. HOT 2
- Issues on the number of chromosomes in different species HOT 2
- a question about Polypred+ HOT 7
- Issue with polyfun.py and memory allocation HOT 2
- how to use sumstats from other methods(except bolt-lmm refered in WIKI) in PolyPred? HOT 4
- How to divide individual ancestry background based on UKB datafield 21000? HOT 5
- Issues on the number of chromosomes in different species (2) HOT 6
- The linear combination of ploypred with ployfun and bolt-lmm results in poorer prediction performance compared to using bolt-lmm alone HOT 19
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from polyfun.