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cmccoy avatar cmccoy commented on July 28, 2024

This is implemented here for unguided proposals.

Guided proposals are a bit trickier. So far I've tried discretizing the tree in a very simple way - the total branch length gets stretched into a line, likelihood is evaluated at N evenly spaced points along the line.

Since there may be multiple points proposed on a single edge, I believe the forward proposal probability should be the sum (in non-log space) of likelihoods for each edge (implemented here, used in the proposal).

from sts.

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