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Comments (4)

sfchen avatar sfchen commented on August 28, 2024 1

I think fq is enough imformative for fastq, but I will consider your suggestion:)

from afterqc.

sfchen avatar sfchen commented on August 28, 2024

Will add an option to support gzip the output files after processing is done.

from afterqc.

serge2016 avatar serge2016 commented on August 28, 2024

Moreover, maybe it would be better to use .good.fastq instead of .good.fq? It seams to me more common.

from afterqc.

sfchen avatar sfchen commented on August 28, 2024

gzip output has been enabled on master branch.

For gzipped input, then the output will be also gzipped.
If the input is not gzipped, you can enable --gzip or -z option to force gzip compression.

gzip input --> gzip output
ungzip input --> ungzip output
ungzip input + --gzip (-z) option --> gzip output

Use --compression to change the compression level (0~9), default is 2. The better the compression, the lower the speed.

from afterqc.

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